Year 7 BMES ERC Publications

Technical Journal Articles

Basinger BC, Rowley AP, Chen K, Humayun MS, Weiland JD, “Finite element modeling of retinal

prosthesis mechanics”. J. Neural Eng. 2009;6:055006.      

Behrend MR, Ahuja AK, Humayun MS, Weiland JD, Chow RH, “Selective labeling of retinal ganglion cells

with calcium indicators by retrograde loading in vitro”. J Neurosci Methods. 2009; 179(2):166-72.

Caspi A, Dorn JD, McClure KH, Humayun MS, Greenberg RJ, McMahon MJ, “Feasibility study of a retinal

prosthesis: spatial vision with a 16-electrode implant”. Arch Ophthalmol. 2009; 127(4):398-401.

Fink W, You CX, Tarbell MA, “_AVS2: Microcomputer-based Artificial Vision Support System for Real-Time

Image Processing for Camera-Driven Visual Prostheses”. J. Biomed. Opt., Vol. 15, 016013 (2010); doi:10.1117/1.3292012 (2010).

Fink W, Tarbell MA, “CYCLOPS: A Mobile Robotic Platform for Testing and Validating Image Processing

and Autonomous Navigation Algorithms in Support of Artificial Vision Prostheses”. Comput. Methods Programs Biomed.; 96(3):226-33; DOI:10.1016/j.cmpb.2009.06.009 (2009).

Greenbaum E, Humayun MS, Sanders CA, Close D, O'Neill HM, Evans BR, “Metabolic Prothesis for

Oxygenation of Ischemic Tissue”. IEEE Trans Biomed Eng. 2009; 56(2):528-31.

Hombrebueno, JR, Tsai MM, Kim HL, de Juan, J., Grzywacz, NM, and E-J. Lee, “Morphological Changes of

            Short-wavelength Cones in the Developing S334ter-3 Transgenic Rat”. Brain Res. 1321, 60-66 (2010).

Horsager A, Greenwald SH, Weiland JD, Humayun MS, Greenberg RJ, McMahon MJ, Boynton GM, Fine I,

            “Predicting visual sensitivity in retinal prosthesis patients”. Invest Ophthalmol Vis Sci. 2009 Apr;                                         50(4):1483-91.

Lo R, Li PY, Saati S, Agrawal RN, Humayun MS, Meng E, “A passive MEMS drug delivery pump for treatment of                             ocular diseases”.Biomed Microdevices. 2009 Apr 25.

Ray, A, Sun GJ, Chan L, Grzywacz NM, Weiland JD, and Lee, EJ, “Morphological Alterations in Retinal

            Neurons in the S334ter-line3 Transgenic Rat”. Cell and Tissue Res. 339, 481-491 (2010).

Ray A, Colodetti L, Weiland JD, Hinton DR, Humayun MS, Lee EJ, “Immunocytochemical analysis of

            retinal neurons under electrical stimulation”. Brain Res. 2009; 1255:89-97. Epub 2008 Dec 9.

Saati S, Lo R, Li PY, Meng E, Varma R, Humayun MS, “Mini drug pump for ophthalmic use”. Trans Am

            Ophthalmol Soc. 2009; 107: 60-70.

Wahjudi P, Oh J, Salam S, Jason A, Rodger, DR, Tai, YC, Thompson M, “Improvement of Metal and

            Tissue Adhesion on Surface-Modified Parylene C”. Journal of Biomedical Materials Research, Part                                         A, 89A(1): 206-214 (2009).

Conference Proceedings

Ambert, N, Greget, R, Bischoff, S, Berger, TW, Bouteiller, JMC, Baudry, M, “Memantine interactions with

            NMDA receptors: Modeling and simulation studies of the effect of frequency”. Society for Neuroscience                          Abstracts, 729.10 (2009).

Allam, SL, Greget, R, Ambert, N, Bouteiller, JMC, Baudry, M, Bischoff, S, Berger, TW, “Modeling the brain:

            From synapse to neuron”. Society for Neuroscience Abstracts, 290.6 (2009).

Behrend MR, Ahuja AK, Humayun MS, Chow RH, Weiland JD, “Electrical Stimulation of the Retina in a 3-

            Dimensional Interface”. 2009 ARVO Annual Meeting, Fort Lauderdale, Florida.

Chan, RHM, Song, D, Berger, TW, “Nonstationary modeling of hippocampal nonlinear dynamics”. Society

            for Neuroscience Abstracts, 290.4 (2009).

Chan, RHM, Song, D, and Berger, TW, “Nonstationary modeling of neural population dynamics”. Proceedings of
            the IEEE EMBS Conference, Minneapolis, MN (2009).

Greget, R, Ambert, N, Baudry, M, Berger, TW, Bouteiller, JMC, Bischoff, S, “Functional simulation of
            excitatory synaptic transmission: A new technology for innovative CNS drugs”. Society for Neuroscience
            Abstracts, 38.6 (2009).

Gutierrez C, Meng E, “Improved Self-Sealing Liquid Encapsulation in Parylene Structures by Integrated Stackable
            Annular-Plate Stiction Valves”. Proceedings of MEMS 2010, Hong Kong, China, (2010),pp. 524-527.

Gutierrez C, McCarty C, Kim B, Pahwa N, Meng E, “An Implantable All-Parylene Liquid-Impedance Based

            MEMS Force Sensor”. Proceedings of MEMS 2010, Hong Kong, China (2010), pp. 600-603.

Gutierrez C, Meng E, “A Dual Function Parylene-Based Biomimetic Tactile Sensor and Actuator for Next
           Generation Mechanically Responsive Microelectrode Arrays”.Transducers 2009, Denver, Colorado,  
           USA (2009), pp. 2194-7.

Hsiao, M, Song, D, and Berger, TW, “Using a modeling-control paradigm to regulate CA1 nonlinear

            dynamics”. Society for Neuroscience Abstracts, 2009, 290.3.

Huang R, Tai YC, “Flexible parylene-based 3D coiled cable”. IEEE NEMS Conference,2010.

Huang R, Tai YC, “Parylene-Pocket Chip Integration”. 22nd IEEE International Conference on MicroElectro Mechanical Systems (MEMS ’09), 2009.

Huang R, Tai YC, “Chip Integration with Flexible Parylene Pocket”. The 5th International Conference on

            Microtechnologies in Medicine and Biology (MMB ’09), 2009.

Lu, U, Song, D, and Berger, TW, “Nonlinear modeling of single hippocampal neurons with dynamic thresholds”. Proceedings of the IEEE EMBS Conference,Minneapolis, MN (2009).

Meng E, Gutierrez C, “Parylene-Based Encapsulated Fluid MEMS Sensors”. IEEE Engineering in Medicine and Biology Conference, Minneapolis, Minnesota (2009), pp. 1039-1041.

Song, D, Chan, RHM, Marmarelis, VZ, Hampson, RE, Deadwyler, SA, Berger, TW,   “Functional hippocampal

            CA3-CA1 connectivity revealed by multiple-input   multiple-output nonlinear dynamics”. Society for                  Neuroscience Abstracts, 290.2 (2009).

Song, D, Chan, RHM, Marmarelis, VZ, Hampson, RE, Deadwyler, SA, and Berger, TW, “Sparse generalized

            Laguerre-Volterra model of neural population dynamics”. Proceedings of the IEEE EMBS Conference,
            Minneapolis, MN (2009).

Taghva, A, Song, D, Berger, TW, “Time-delayed mutual information versus crosscorrelation in the

detection of information transfer”. Society for Neuroscience Abstracts, 290.1 (2009).

Weiland JD, Humayun MS, Eckhardt H, Ufer S, Laude L, Basinger B, Tai YC, “A comparison of retinal

            prosthesis electrode array substrate materials”. Annual International Conference of the IEEE                                          Engineering in Medicine and Biology Society, EMBC, 2009, Page(s): 4140 – 4143.

Yu F, Lin J, Chen PJ, Tai YC, “Parylene stiction”. Proceedings, IEEE MEMS conference (MEMS ’10), Hong

            Kong, 2010, pp. 408-411.

Yu F, Lin C, Chen PJ, Tai YC, “Stiction of parylene C to silicon surface measured using blister tests”. IEEE

            NEMS Conference, 2010.

In-Trade Journals

Song D, Chan RHM, Marmarelis VZ, Hampson RE, Deadwyler SA, Berger TW, “Nonlinear modeling of

            neural population dynamics for hippocampal prostheses”.Neural Networks, 22, 1340-1351 (2009).

Song D, Wang Z, Marmarelis VZ, Berger TW, “Parametric and non-parametric modeling of short-term
           synaptic plasticity. Part I: Computational study”. Journal of Computational Neuroscience, 26, 1-19 (2009).

Song D, Marmarelis VZ, Berger TW, “Parametric and non-parametric modeling of    shortterm synaptic

            plasticity. Part II: Experimental study”. Journal of Computational Neuroscience, 26, 21-37 (2009).